Index

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

S

satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition

Used to test if the supplied graph is within the bounds of the condition's implementation.

satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.CliqueCondition

Used to test if the supplied graph is within the bounds of the condition's implementation.

satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.DirectedCliqueCondition

Used to test if the supplied graph is within the bounds of the condition's implementation.

satisfies(Graph) - Method in class edu.claflin.finder.logic.Condition

Used to test if the supplied graph is within the bounds of the condition's implementation.

searchNode(Graph, Graph, Node, List<Node>) - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch

Helper method to search for the SubGraphs in Depth First search.

searchNode(Graph, Node) - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch

Helper method to search for the SubGraphs in Breadth First Search.

serialVersionUID - Static variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

serialVersionUID - Static variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

serialVersionUID - Static variable in class edu.claflin.finder.struct.PrioritySet

set(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Set the q value at the ith tree and heap's j column.

set(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Set a single element.

set(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

setA(double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue

setc1(double) - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

setc2(double) - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

setComparator() - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch

setComparator() - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch

setData(Double) - Method in class edu.claflin.finder.logic.Edge

Access method for the Edge's data (such as weight).

setFileLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil

Sets the FileLogs HashMap for selective logging to the file.

setForceOnAdd(boolean) - Method in class edu.claflin.finder.logic.ConditionedGraph

Accessor method for configuring if conditions are forced on add of network components.

setFreq(int) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

setGraph(Graph) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

setGraphSortOrder(Algorithm.GraphSortOrder) - Method in class edu.claflin.finder.algo.Algorithm

setGroup(String) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener

setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator

setHeap(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Set the value q and the ith heap's j column.

setI(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode

setIndex(int) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo

setIndex1(int) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

setIndex2(int) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

setInfo(int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

setInfo(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode

setInfo(T) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

Set the information of this TreeNode.

setIntegerIdentifier(int) - Method in class edu.claflin.finder.logic.Node

setJ(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

setLeft(HuffmanNode) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

setLeftChild(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

Set the left child TreeNode.

setMatrix(int[], int[], Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Set a submatrix.

setMatrix(int[], int, int, Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Set a submatrix.

setMatrix(int, int, int[], Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Set a submatrix.

setMatrix(int, int, int, int, Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Set a submatrix.

setMinNodeCount(int) - Method in class edu.claflin.finder.algo.Algorithm

setModules(Map<Integer, List<Node>>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

setName(String) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

setNode(T, TreeNode<T>, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

Set all the information of this TreeNode.

setNodeToModule(Map<Node, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

setOutput(File) - Static method in class edu.claflin.finder.Global

Sets the output directory for storing results.

setPartiteNumber(int) - Method in class edu.claflin.finder.algo.Algorithm

setPartiteNumber(int) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

setPartitionNumbers(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener

setPartitionNumbers(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator

setProgress(double) - Method in class edu.claflin.finder.algo.Algorithm

setQ(double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

setQ(double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG

setRight(HuffmanNode) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

setRightChild(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

Set the right child TreeNode.

setSigma(double) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

setTerminalLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil

Sets the TerminalLogs HashMap for selective terminal logging.

setTree(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Set value q and the ith tree's j column.

setUndirected(boolean) - Method in class edu.claflin.finder.logic.Edge

Access method for the Edge's undirectedness parameter.

setUniqueSubGraphs(ArrayList<Graph>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener

setUniqueSubGraphs(ArrayList<Graph>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator

setWeightName(String) - Method in class edu.claflin.finder.algo.Algorithm

ShortestPath - Class in edu.claflin.finder.algo.shortestpath

ShortestPath(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.shortestpath.ShortestPath

Public Constructor for creating Shortest Path Algorithm.

showTree(HuffmanNode, String) - Method in class edu.claflin.finder.algo.huffman.HuffmanCode

SIFGraphIO - Class in edu.claflin.finder.io.graph

A class for reading and writing graphs in the SIF format.

SIFGraphIO() - Constructor for class edu.claflin.finder.io.graph.SIFGraphIO

sigma - Variable in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

sigmaNotationPa(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation

sigmaNotationPaLogPa(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation

sigmaNotationQi(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation

sigmaNotationQiLogQi(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation

SigmaNotationWiyLogWiy(int, ArrayList<Double>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation

SigmaWaLogWa(int, ArrayList<Double>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation

SigmaWyLogSigmaWy(int, ArrayList<Double>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation

SimpleGraphIO - Class in edu.claflin.finder.io.graph

A class for reading and writing graphs.

SimpleGraphIO() - Constructor for class edu.claflin.finder.io.graph.SimpleGraphIO

size - Variable in class edu.claflin.finder.struct.DisjointSet

size() - Method in class edu.claflin.finder.algo.clustering.Communities

size() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapQueue

size() - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap

size() - Method in class edu.claflin.finder.struct.DisjointSet

Get the number of disjoint sets.

sortOrder - Variable in class edu.claflin.finder.algo.Algorithm

source - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

source - Variable in class edu.claflin.finder.logic.Edge

The node representing the source.

SpanningTreeDriver - Class in edu.claflin.finder

SpanningTreeDriver() - Constructor for class edu.claflin.finder.SpanningTreeDriver

SparseMatrix - Class in edu.claflin.finder.algo.clustering.struct.fast_greedy_struct

SparseMatrix is a sparse matrix with row format.

SparseMatrix(int) - Constructor for class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

empty sparse matrix with allocated number of rows

split(int) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

startNode - Variable in class edu.claflin.finder.algo.spanningtree.Prim

startSearch(PrioritySet<Prim.DistanceRecord>, List<Node>, List<Node>, Graph) - Method in class edu.claflin.finder.algo.spanningtree.Prim

stepOptimization() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

steps - Variable in class edu.claflin.finder.algo.clustering.Walktrap

sum(Map<Integer, Double>, Map<Integer, Double>) - Static method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

superAddPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph

Private method for circumventing the condition restrictions.

suppressLog - Variable in class edu.claflin.finder.logic.Graph

Used to suppress logging.

swap(int, int) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap

SwapInfo(int, int, double) - Constructor for class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm.SwapInfo

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form